Index

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

C

c1sigma - Variable in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

c2sigma - Variable in class edu.claflin.finder.algo.clustering.Walktrap.MutualConnectionsRecord

calculateModuleExitWeights() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

calculateModuleWeights() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

calculateNewModule(Map<Node, Integer>) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

calculateRelativeWeights() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

calculateTotalExitWeight() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

calculateTotalWeight() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.RelativeUndirectedBitLength

cdiv(double, double, double, double) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

cdivi - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

cdivr - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.EigenvalueDecomposition

checkMatrixDimensions(Matrix) - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Check if size(A) == size(B)

checkNode(Node) - Method in class edu.claflin.finder.logic.Graph

Verifies that the node is NOT in the graph.

checkNodeGroupings(Graph) - Method in class edu.claflin.finder.algo.MatrixPatternAnalyzer

Deprecated.

Step 2: Iterate on Step 1 through all contiguous node groupings.

checkNodeIndex(int) - Method in class edu.claflin.finder.logic.Graph

Deprecated.

No replacement. Further operations shall utilize {)}

checkSubGraphs(Graph, int) - Method in class edu.claflin.finder.algo.MatrixPatternAnalyzer

Deprecated.

Step 3: Repeat Step 2 for each "Cornered" Sub-matrix of the original Graph.

checkZeroMatrices(Graph, int) - Method in class edu.claflin.finder.algo.MatrixPatternAnalyzer

Deprecated.

Step 1: Check for valid 0 Sub-matrices.

clear() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

clear() - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap

clearRow(int) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.SparseMatrix

Clear the ith tree and heap

CliqueCondition - Class in edu.claflin.finder.logic.cond

Represents a Clique condition.

CliqueCondition() - Constructor for class edu.claflin.finder.logic.cond.CliqueCondition

clone() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Clone the Matrix object.

closestReachableUnvisited(HashMap<Node, Double>, Graph, Set<String>) - Method in class edu.claflin.finder.algo.shortestpath.DijkstraShortestPath

cluster() - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation

ClusteringAlgorithm - Class in edu.claflin.finder.algo.clustering

ClusteringAlgorithm(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.clustering.ClusteringAlgorithm

coarse_tuning(Graph) - Method in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation

codeLengthThreshold - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapImplementation

COMMON_ARGS(String) - Constructor for enum edu.claflin.finder.algo.ArgumentsBundle.COMMON_ARGS

CommunicationListener - Interface in edu.claflin.finder.logic.cygrouper

communicator - Static variable in class edu.claflin.finder.logic.cygrouper.Communicator

Communicator - Class in edu.claflin.finder.logic.cygrouper

Communicator() - Constructor for class edu.claflin.finder.logic.cygrouper.Communicator

communities - Variable in class edu.claflin.finder.algo.clustering.struct.infomap_struct.InfomapAlgorithm

communities - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorAlgorithm

communities - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller

communities - Variable in class edu.claflin.finder.algo.clustering.struct.louvain_struct.LouvainAlgorithm

Communities - Class in edu.claflin.finder.algo.clustering

Communities(Graph, boolean) - Constructor for class edu.claflin.finder.algo.clustering.Communities

Constructor to initialize 1-Node Communities from a Graph.

Communities(Map<Integer, List<Node>>, Graph, boolean) - Constructor for class edu.claflin.finder.algo.clustering.Communities

Constructor to create Communities from existing Community group.

Communities(Map<Integer, List<Node>>, Graph, boolean, double) - Constructor for class edu.claflin.finder.algo.clustering.Communities

Constructor called by copy().

communitiesToString(HashMap<Integer, List<Node>>) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Tester

communitiesToString(HashMap<Integer, List<Node>>, Graph) - Static method in class edu.claflin.finder.algo.clustering.struct.louvain_struct.Tester

community - Variable in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.VectorValue

comp - Variable in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap

ComparableComparator() - Constructor for class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap.ComparableComparator

comparator - Variable in class edu.claflin.finder.algo.BreadthFirstTraversalSearch

comparator - Variable in class edu.claflin.finder.algo.DepthFirstTraversalSearch

compare(HuffmanNode, HuffmanNode) - Method in class edu.claflin.finder.logic.comp.HuffComparator

compare(Prim.DistanceRecord, Prim.DistanceRecord) - Method in class edu.claflin.finder.algo.spanningtree.Prim.DistanceRecordComparator

compare(Edge, Edge) - Method in class edu.claflin.finder.logic.comp.EdgeWeightComparator

Compares the edges based on the D data held by the edge.

compare(Graph, Graph) - Method in class edu.claflin.finder.algo.Algorithm

Compares the two graphs based on edges.

compare(Graph, Graph) - Method in class edu.claflin.finder.logic.comp.GraphAverageWeightComparator

compare(Graph, Graph) - Method in class edu.claflin.finder.logic.comp.GraphSizeComparator

compare(Node, Node) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality.BetweennessComparator

compare(T, T) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap.ComparableComparator

compareTo(HeapNodeFG) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

Compare this HeapNode to that HeapNode.

compareTo(HeapNodeFG) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.IndexedHeapNode

compareTo(TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.TreeNode

compareTo(TreeNodeInfo) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.TreeNodeInfoFG

compareTo(HeapNodeWT) - Method in class edu.claflin.finder.algo.clustering.struct.walk_trap_struct.HeapNodeWT

compareTo(Node) - Method in class edu.claflin.finder.logic.Node

compareToQ(HeapNodeFG) - Method in class edu.claflin.finder.algo.clustering.struct.fast_greedy_struct.HeapNodeFG

components - Variable in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.LeadingEigenvectorCaller

ComponentsDriver - Class in edu.claflin.finder

ComponentsDriver() - Constructor for class edu.claflin.finder.ComponentsDriver

computeBetweenness(Queue<Node>) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.BetweennessCentrality

Condition - Class in edu.claflin.finder.logic

Represents a graph condition in memory.

Condition() - Constructor for class edu.claflin.finder.logic.Condition

ConditionedGraph - Class in edu.claflin.finder.logic

Represents a "conditioned" graph.

ConditionedGraph(Graph, Collection<Condition>) - Constructor for class edu.claflin.finder.logic.ConditionedGraph

Private constructor used to create copies of ConditionedGraph objects.

ConditionedGraph(String) - Constructor for class edu.claflin.finder.logic.ConditionedGraph

Public constructor for creating a simple ConditionedGraph.

ConditionedGraph(String, Collection<Condition>) - Constructor for class edu.claflin.finder.logic.ConditionedGraph

Public constructor for creating a ConditionedGraph.

ConditionedGraph(String, Collection<Condition>, boolean) - Constructor for class edu.claflin.finder.logic.ConditionedGraph

Public constructor for creating a ConditionedGraph.

conditionOther(Graph) - Method in class edu.claflin.finder.logic.ConditionedGraph

Private method used for copying the ConditionedGraph.

conditions - Variable in class edu.claflin.finder.logic.ConditionedGraph

The List of Conditions applied to this Graph.

conditionsList - Variable in class edu.claflin.finder.algo.ArgumentsBundle

The List of conditions to apply to the Algorithm.

connectedCommunities(List<Node>, List<Node>) - Method in class edu.claflin.finder.algo.clustering.Communities

Determine whether 2 Communities are connected.

ConnectedComponentsDFS - Class in edu.claflin.finder.algo

Processes a Graph searching for connected components by performing a depth first search.

ConnectedComponentsDFS(ArgumentsBundle) - Constructor for class edu.claflin.finder.algo.ConnectedComponentsDFS

Public constructor for initializing the DepthFirstTraversalSearch with default conditions.

connections - Variable in class edu.claflin.finder.logic.cygrouper.CygrouperNode

constructWithCopy(double[][]) - Static method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Construct a matrix from a copy of a 2-D array.

contains(Object) - Method in class edu.claflin.finder.algo.clustering.struct.girvan_newman_struct.MapBinaryHeap

contains(T) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

Is the specified ElemntType in the BinarySearchTree?

contains(T) - Method in class edu.claflin.finder.struct.DisjointSet

Whether the given object is in the disjoint sets.

contains(T, TreeNode<T>) - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

containsKey(Integer) - Method in class edu.claflin.finder.algo.clustering.Communities

Whether the Community structure contains the given community index.

containsNode(Node) - Method in class edu.claflin.finder.logic.Graph

Checks if the graph contains the given node.

convertCyfinderEdge(String, String) - Method in class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

copy() - Method in class edu.claflin.finder.algo.clustering.Communities

copy() - Method in class edu.claflin.finder.algo.clustering.struct.leading_eigenvector_struct.Matrix

Make a deep copy of a matrix

copy() - Method in class edu.claflin.finder.logic.ConditionedGraph

Copies this Graph object using the getSubGraph() method.

copy() - Method in class edu.claflin.finder.logic.Graph

Copies this Graph object using the getSubGraph() method.

cprobs(List<Node>, Graph, List<Node>) - Method in class edu.claflin.finder.algo.clustering.Walktrap

Get a probability vector for a community.

createBackbone() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

Time complexity: O(n)

createPerfectBST() - Method in class edu.claflin.finder.algo.clustering.struct.BinarySearchTree

Time complexity: O(n)

crosstalk(Graph, Graph) - Method in class edu.claflin.finder.logic.Graph

Crosstalk of 2 subgraphs of this Graph.

cull(ArrayList<Graph>) - Method in class edu.claflin.finder.algo.Algorithm

Removes duplicate subGraphs from the provided ArrayList.

CygrouperAssembler - Class in edu.claflin.finder.logic.cygrouper

CygrouperAssembler(List<Edge>) - Constructor for class edu.claflin.finder.logic.cygrouper.CygrouperAssembler

CygrouperEdge - Class in edu.claflin.finder.logic.cygrouper

CygrouperEdge(String, String) - Constructor for class edu.claflin.finder.logic.cygrouper.CygrouperEdge

CygrouperNode - Class in edu.claflin.finder.logic.cygrouper

CygrouperNode(String) - Constructor for class edu.claflin.finder.logic.cygrouper.CygrouperNode

CytogrouperMain - Class in edu.claflin.finder.logic.cygrouper

CytogrouperMain(List<Graph>, CommunicationListener, int) - Constructor for class edu.claflin.finder.logic.cygrouper.CytogrouperMain

A B C D E F G H I J K L M N O P Q R S T U V W Z
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form